PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439111.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 472aa    MW: 52168.3 Da    PI: 9.4524
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_016439111.1 68 FICEICNKGFQRDQNLQLHRRGH 90
                    89*******************88 PP

2zf-C2H211.80.00074144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_016439111.1 144 WKCEKCSKQYAVQSDWKAHSKIC 166
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.85E-76790No hitNo description
PROSITE profilePS5015710.8456890IPR007087Zinc finger, C2H2
SMARTSM003550.0226890IPR015880Zinc finger, C2H2-like
PfamPF121715.6E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355100109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.85E-7139164No hitNo description
SMARTSM00355140144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MMSDNGLPSL PSSIRDFIQQ DPNPSSNIPN PNSNPASNKR KRNLPGNPDP DAEVIALSPK  60
SLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVKKKVYI CPEKTCVHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KQYAVQSDWK AHSKICGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RFTSVPNTAN LNLRNQLMNS GMANLQQHNG NSQFGSLFRP  240
ELMGLGLDPS SQLNLDGQKP RLPLWLDNAN SGNPDDFLAT PSSTTSSLPH DLVQMASHNS  300
NNQWFINGNS ASASSSSMQQ PRVVLKEEEE INRRNLSEST INSSMYYNNS HQETTPQVAH  360
MSATALLQRA AQMGSTRSSN SALFSSSGFG LSSNFASTLA THDNIHGNNG LLLGDTNANS  420
LMMMQNKGKQ VNIPSGNTEG SLTRDFLGVG GNENRPFLQQ SELAKFGNSA IF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316701e-126AC231670.1 Solanum tuberosum chromosome 11 clone RH121D01, complete sequence.
GenBankHG9754501e-126HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612448.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_016439111.10.0PREDICTED: protein indeterminate-domain 9-like
SwissprotQ944L31e-121IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLK4C9P00.0K4C9P0_SOLLC; Uncharacterized protein
TrEMBLM0ZUY60.0M0ZUY6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000086940.0(Solanum tuberosum)
STRINGSolyc06g075250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-119C2H2-like zinc finger protein